NEW MEXICO JUNIOR COLLEGE

MISSION STATEMENT

Microbiology

SYLLABUS

  1. GENERAL COURSE INFORMATION
  2. A. Course Title: Microbiology
    B. Course Number: BI 224 - 10286
    C. Semester: Spring 2018
    D. Days/Time: Online
    E. Credit Hours: 4
    F. Instructor: Goad, Kay
    G. Office: Heidel Hall (HH) 220
    H. Email Address: KGoad@nmjc.edu
    I. Office Phone: (575) 492-2818
    J. Office Hours: Monday: 10:00:00 AM-12:00:00 PM (MST);
    Tuesday: 4:00:00 PM-6:00:00 PM (MST);
    Wednesday: 10:00:00 AM-12:00:00 PM (MST);
    Thursday: 9:30:00 AM-11:30:00 AM (MST);
    Friday: 9:30:00 AM-11:30:00 AM (MST);
    I will respond to Canvas inbox messages within 24 hours Monday - Friday.
    K. Time Zone: Mountain Time
    L. Prerequisite(s): Grade of "C" in a College level biology course
    M. Corequisite(s): BI 224L
    N. Class Location: Virtual
  3. COURSE DESCRIPTION

    Microbiology is a study of the importance of microbiological organisms in life processes; basic principles of microbiology; isolation; morphology; physiology; identification and applications of bacteria, fungi, and viruses; and medical bacteriology and bacterial involvement in disease. Concurrent enrollment in BI224L (laboratory) is required. This is a four credit hour course. Prerequisites: College level biology course (BI 114, BI 124, BI 134, BI 144, or BI 214A)

  4. COURSE RATIONALE / TRANSFERABILITY

    Biology 224 (Microbiology) is for science/non-science majors and will transfer to most two and four year colleges. Information concerning articulation agreements with regional colleges and universities can be obtained through NMJCs Counseling Office. It is important to check with the institution to which you are planning to attend to determine transferability. Planning for course credit transfer is ultimately the student's responsibility. All students are encouraged to keep the course syllabus as it will help determine the transferability of this course credit to another institution.

  5. REQUIRED / SUGGESTED COURSE MATERIALS

    Required:

    1. TEXTBOOK: Microbiology: An Introduction, 12th ed., by Tortora, Funke, & Case. ISBN: 978-0-321-92915-0
    2. LAB MANUAL: No purchase required. Materials for lab component will be made available via Canvas, NMJCs Learning Management System.
    3. Access to a personal computer (PC) or laptop with user rights to install required online Canvas plug-ins (e.g. Respondus Browser, Adobe Reader, Flash, & Java). Canvas does not totally support Smart phones, iPads or tablets. A PC or laptop will be needed to submit the majority of coursework. (NOTE: Non-local students are also required to have available a computer with a webcam, microphone, and appropriate Internet bandwidth to use Respondus Monitor for submission of the proctored final exam. There is a $10 fee.)

    Suggested:

    1. TUTORIAL SERVICES: Students may sign up for free personal tutoring at the NMJC Learning Assistance Center in Mansur Hall Room 121.
    2. WRITING REFERENCE BOOK: Glenn, C. (2015). Harbrace Essentials With Resources for Writers In... (2nd ed). Cengage Learning.

    You can buy your books online at the NMJC Bookstore.

  6. GRADING POLICY

    Students attending New Mexico Junior College will be evaluated according to the following grading scale:
    90 - 100% = A
    80 - 89% = B
    70 - 79% = C
    60 - 69% = D
    0 - 59% = F

    For students to receive credit for coursework, it must be submitted on or before the deadline. Late work will be not be accepted for credit except under extreme circumstances (e.g. NMJC experiences technical difficulties with its Canvas server for an extended period of time on the last day of submission). If this occurs, it is the sole responsibility of the student to document the issue with NMJCs 24/7 helpdesk and report this to the instructor within 24-hours. A one-day extension may be granted at the discretion of the instructor.Additionally, original individual coursework must be submitted. Plagiarism and academic dishonesty will not be tolerated and will result in a zero for that particular assignment along with enforcement of other possible sanctions (refer to NMJC Plagiarism and Academic Honesty Policies within the syllabus).

    Grades earned on tests and assignments will be available in Canvas within 72-hours after the deadline. Some assignments will take longer to evaluate (e.g. essay, lab reports & discussion posts).

    The following formula will be used to calculate the final course grade, which is composite between lecture and lab.

    50% - Lecture Component
    30% - Laboratory Component
    20% - Comprehensive Proctored Final Exam

    No curve on the final course grade will be available.

    Lecture Component:
    Lecture Exams have a four-day submission period. They are timed and considered closed book.

    Discussions are earned by submitting posts within the Learning Modules. To earn credit, information submitted must (a) follow guidelines set by the instructor, (b) be original, and (c) properly reference information gathered from credible scientific sources. Online encyclopedias (e.g. Wikipedia) and other opinionated resources are unacceptable.

    Additional lecture assignments include the submission of "Getting Started" activities due by Wednesday of the first week and a 5-paragraph essay.

    Laboratory Component: Includes lab quizzes & reports.

    Comprehensive Proctored Final Exam: Finals will be administered during the last week of the semester by NMJCs testing center located in the Ben Alexander Building (local students) or via Respondus Monitor (non-local students).

    Refer to the "ADDITIONAL INFORMATION" section for more details concerning coursework.

    Retrieving Grades from T-BirdWeb Portal
    Go to the New Mexico Junior College T-BirdWeb Portal login page. Please enter your User Identification Number (ID), which is your Banner ID, and your Personal Identification Number (PIN). When finished, click Login.

    Tips for Success in Online Courses:
    1. Log in to class regularly.
    2. Pay attention.
    3. Take notes.
    4. Keep up with readings and assignments.
    5. Ask questions when you do not understand something.
    6. Utilize your professor’s office hours and e-mail.
    7. Read the text.
    8. Adhere to the deadlines posted in the course outline.

  7. INSTITUTIONAL STUDENT LEARNING OUTCOMES

    New Mexico Junior College’s institutional student learning outcomes represent the knowledge and abilities developed by students attending New Mexico Junior College. Upon completion students should achieve the following learning outcomes along with specific curriculum outcomes for respective areas of study:

  8. DEPARTMENTAL STUDENT LEARNING OUTCOMES

    New Mexico Junior College's broad range of science courses provides students with an opportunity to achieve their academic goals by fostering higher order thinking skills, basic academic success skills, discipline-specific knowledge and skills, and scientific and academic values.

    The course content of Microbiology (BI 224) supports NMJCs mission which is "promoting success through learning" by encouraging students to accomplish the following:
    1. Describe the process of scientific inquiry.
    2. Solve problems scientifically.
    3. Communicate scientific information.
    4. Apply quantitative analysis to scientific problems.
    5. Apply scientific thinking to real world problems.

  9. SPECIFIC COURSE STUDENT LEARNING OUTCOMES

    Upon completion of the course students should be able to:
    Chapter 1
    1. Explain a brief history of microbiology including significant scientists and their theories/contributions to microbiology and modern developments in microbiology
    2. Discuss the practical applications of microbes in human welfare and disease.
    3. Explain the basic principles and various characteristics utilized to classify microorganisms: monerans, fungi, algae, protists, and helminthes.
    Chapter 2
    4. Understand some basic principles of the chemistry of biology: atomic structure, bonds, and chemical reactions.
    5. Describe the structure and function of important biological molecules (both organic and inorganic).
    Chapter 3
    6. Identify the uses/components of the different types of microscopes.
    7. Differentiate between the types/uses of stains.
    Chapter 4
    8. Compare prokaryotic and eukaryotic cells in terms of their size, shape, and structures.
    9. Describe how bacteria reproduce and how mutations occur.
    10. Describe the functions of the internal/external structures of prokaryotic and eukaryotic cells.
    11. Explain how bacteria are classified as Gram positive and negative based on cell wall composition.
    12. Describe mechanisms used to transport molecules across cell membranes.
    Chapter 5
    13. Differentiate between catabolic and anabolic reactions.
    14. Identify the roles that enzymes and substrates play in chemical reactions and factors which influence enzyme activity.
    15. Have a basic understanding of the various biochemical pathways microorganisms use in the production of energy.
    16. Explain how biochemical tests can be used for bacterial identification.
    Chapter 6
    17. Describe the physical, nutritional, and chemical requirements for bacterial growth.
    18. Explain the differences between the different culture media and culture techniques used to grow microorganisms.
    19. Describe the growth of bacterial cultures in terms of how bacteria divide, phases of growth, and measurement of bacterial populations.
    Chapter 7
    20. Define the terminology relating to the control of microbial growth.
    21. Contrast the use of physical processes and chemical agents in the control of microbial growth.
    Chapter 12
    22.Describe the basic characteristics of protists, fungi, and animals.
    23.Distinguish between the different types of protozoa based on motility
    24.Identify the morphological structures of fungi
    25.Discuss examples of helminthes and arthropod vectors
    Chapter 13
    26. Describe the general characteristics, structures, and classification of viruses.
    27. Explain how viruses are cultured and studied, including the steps involved in viral replication.
    28. Discuss the relationship between viruses and cancer.
    Chapter 14
    29. Understand the relationships among normal flora, transient flora, opportunists and pathogens.
    30. Describe the interrelatedness of the classification of disease, the spread of disease, and the use of epidemiology to control disease.
    31. Describe patterns of disease, the chain of transmission of disease, and factors that contribute to nosocomial infections.
    Chapter 15
    32. Describe mechanisms of entry, preferred portals of entry and exit, and processes by which microbes cause disease.
    Chapter 16
    33. Compare and contrast specific and non-specific host defenses.
    34. Explain several non-specific defense mechanisms, i.e. fever, inflammation, antimicrobial substances.
    Chapter 17
    35. Differentiate between humoral and cell-mediated immunity.
    36. Contrast primary and secondary immune responses.
    37. Compare and contrast naturally and artificially acquired adaptive immunity.
    Chapter 19
    38. Define congenital immunodeficiency and describe the mechanism of pathogenicity in acquired immunodeficiency diseases.
    39. Define hypersensitivity reactions and autoimmune & graft vs. host diseases.
    Chapter 20
    40. Compare and contrast sensitivity methods used to determine antimicrobial effectiveness, i.e. broth dilution, disk diffusion.
    41. Identify several methods by which antibiotics cause damage to microorganisms.
    42. Name examples of antimicrobials and denote how they affect microbial growth.
    Chapters 21-26
    43. Describe the basic structures and defense mechanisms of body systems, i.e. integumentary, nervous, cardiovascular, lymphatic, respiratory, digestive, uro-genital .
    44. Describe the major diseases of each body system, including etiologic agent, transmission, prevention, signs and symptoms, and treatments.

  10. REQUIRED TECHNICAL COMPETENCIES AND EQUIPMENT

    Student Requirements
    If you have not already received login information for Canvas/T-BirdWeb Portal/E-mail, you will need to contact the Enrollment Management office at (575) 492-2546.

    Check first-time login page for instructions at www.nmjc.edu/distancelearning/coursescourseschedules/canvasinstructions.aspx.

    Canvas Assistance

    You must have access, on a regular basis, to a computer that supports the Canvas minimum specifications and has an active connection to the Internet. See the minimum computer specification requirements at www.nmjc.edu/distancelearning/coursescourseschedules/Canvasinstructions.aspx.

  11. ADDITIONAL INFORMATION

    This is an 16-week online lecture/laboratory biology course geared for student’s majoring in science or seeking a healthcare profession. The course contains four learning modules, each 3-4 weeks in length. Canvas, NMJCs Learning Management System, will be used to deliver course information for both the lecture/laboratory component. The final course grade will be a composite of both lecture and laboratory.

    To log on to your Canvas account, use your “A” number (or Smart ID) along with a password. This is typically your birth date (e.g. 061280) until you change it in within your TBird WebPortal account. If you cannot log into Canvas and require troubleshooting help, call the 24/7 helpdesk at 575.399.2199. All coursework is to be submitted via Canvas. Instructions for submitting coursework is also available on Canvas. Should any questions arise during the semester, simply inbox message the instructor. Questions will be addressed within a 24-hour period during weekdays and 48-hours on weekends.

    Lecture Component:
    Lecture Exams:
    There are three unit (or learning module) exams, each consisting of materials presented in six chapters (see course outline). Pay close attention to deadlines for each unit exam. To access the on-line exams, (a) log-in to Canvas using Respondus LockDown Browser, (b) click on "Modules", (c) select the appropriate unit exam, and (d) enter the password "micro". (The password is case sensitive and omit quote marks). Tests are timed and are open for a period of 75-minutes once accessed. Additionally, once an exam has been submitted for grading, it cannot be re-entered. Should technical problems arise during the testing process (e.g. Canvas logs you off and you cannot regain entry into the exam), it is the student's responsibility to report the problem to the instructor within 24-hours and provide appropriate documentation of the issue via NMJC’s helpdesk (575.399.2199). There are no guarantees that late submissions or resubmissions of exams will be accepted for credit. It is at the discretion of the instructor. Feedback on exams will be provided upon request.

    Discussions: The purpose of discussions is to broaden students' knowledge by applying course content to the real world. Postings should add information beyond what is presented in the textbook. Always use proper "netiquette" when posting as information is viewed by all class members.

    Getting Started Activities: Canvas assignments are required to be completed before starting course work. They evaluate student’s technical readiness to participate in an online course. Communicate with the instructor if are unable to complete one of the required tasks due to computer issues.

    Five-paragraph Essay: Instructions and grading rubric is provided in Canvas. Turn-it-in.com will be used to evaluate originality.

    Laboratory Component: (Quizzes/Reports)
    Even though students may not be able to actually perform all exercises, they are required to read/understand materials presented in the laboratory component of the course. Laboratory exercises are modified for the on-line learner. After completion of each laboratory exercise, there is a laboratory quiz or report that is to be submitted. Protocol for taking quizzes is the same unit exams, except they are shorter in length and have only 20-30 minutes to complete.

    Comprehensive Proctored Final Exam:
    Local Students (within driving distance of NMJC) are required to use NMJC's testing center which is free. It is located in the Ben Alexander Student Union Building. According to Testing Center policies, students must show proper picture ID and electronic devices are not allowed in the testing area. Standard operating hours are 7:30 am - 7:00 pm Monday - Thursday; however, it is strongly recommended that students confirm time of operation as they are subject to change. Students must arrive at least 1 hour before closing time. Appointments are strongly recommended but not required.

    Non-local students are required to use Respondus Monitor, which is an extension of Respondus Lockdown Browser. It requires a computer with webcam, microphone and appropriate Internet bandwidth. An ID is required along with an environmental check to ensure testing integrity is maintained. There is a practice quiz within Canvas to assist you in the set-up that is required to be submitted on or before withdrawal date of the course. There is a $10 fee.

  12. GENERAL/MISCELLANEOUS

    Students will be held responsible for the information on these pages.

    Academic Honesty
    Each student is expected to maintain the highest standards of honesty and integrity in online academic and professional matters. The College reserves the right to take disciplinary action, up to and including dismissal, against any student who is found guilty of academic dishonesty or otherwise fails to meet these standards. Academic dishonesty includes, but is not limited to, dishonesty in quizzes, tests, or assignments; claiming credit for work not done or done by others; and nondisclosure or misrepresentation in filling out applications or other College records. Cheating or gaining illegal information for any type of graded work is considered dishonest and will be dealt with accordingly.

    Americans with Disabilities Act (ADA) Information
    Any student requiring special accommodations should contact the Special Needs Student Services Coordinator at (575) 492-2576 or by e-mail at krueda@nmjc.edu.

    Attendance Policy and Participation Expectations
    It is expected that you regularly log into class at least three times weekly and check your Canvas mail to ensure you have not missed any changes/updates. Students are expected to complete discussions/quizzes/tests/ assignments before deadlines expire.

    Canvas Help
    If you experience difficulty with Canvas you may reach the Canvas Helpdesk at canvashelpdesk@nmjc.edu, or by calling the 24 hour helpdesk phone at (575) 399-2199.

    Netiquette
    The professor is responsible for monitoring and evaluating student conduct and student behavior within the Canvas course. By registering for this class, the student is assumed to have entered into an agreement with New Mexico Junior College and the professor to log into the class regularly and to behave in an appropriate manner at all times. Disruptive behavior may result in the student being removed from the class and dropped for the semester. For comprehensive information on the common rules of netiquette and other online issues, please review the NMJC Online Student Handbook.

    Online Learning Environment
    By participating in an online class, you undertake responsibility for your own progress and time management.

    Plagiarism
    Offering the work of another as one’s own, without proper acknowledgment, is plagiarism; therefore, any student who fails to give credit for quotations or essentially identical expression of material taken from books, encyclopedias, magazines and other reference works, or from the themes, reports, or other writings of a fellow student, is guilty of plagiarism. Plagiarism violates the academic honesty policy and is considered cheating.

    Tutoring Assistance
    Free tutoring services are available to all NMJC students through Brainfuse and the Academic Success Center located in Mansur Hall room 123 and 124.

    Withdrawal Policy
    The instructor has the right to drop any student who has failed to log on to Canvas for two weeks or more, but it is not guaranteed that the instructor will drop you. If the student chooses to stop attending a class, he/she should withdraw from the class by accessing your student account in the T-Bird Web Portal at www.nmjc.edu, or submitting the required paperwork to the Registrar’s Office by TBA. Failure to withdraw yourself from a course by this date may result in your receiving an “F” in the course. All students are encouraged to discuss their class status with the professor prior to withdrawing from the class.

  13. ACADEMIC CALENDAR
  14. FINALS SCHEDULE
  15. COURSE OUTLINE

     

    Course schedule is tentative and subject to change.

    Week Of

    Lecture  (Chapter Readings)

    Laboratory Topic

    Learning Module 1 Exam (Ch. 1-4, 12, 13) January 16 – February 11

     

    Assignment: Discussion Board Post

    Week 1

    Week 2

    Ch. 1 – Microbial World and You

    Ch. 2 – Chemical Properties

    Ch. 3 – Observing Microorganisms

    Lab 1 Microscopy

    Lab 2 Diversity of Microbial Life

    Quiz: Labs 1 & 2

    Week 3

    Week 4

    Ch. 4 – Anatomy of Prokaryotes

    Ch. 12 – Classification of Eukaryotes

    Ch. 13 – Viruses, Viroids, and Prions

    Lab 3 Aseptic Transfer

    Lab 4 Stains

    Quiz: Labs 3 & 4

    Learning Module 2 Exam (Ch. 5-7, 14, 15, 20) February 12 – March 11

    Week 5

    Week 6

    Ch. 5 – Microbial Metabolism

    Ch. 6 – Microbial Growth

    Ch. 7 – Control of Microbial Growth

    Lab 5 Ubiquity of Microbial Life

    Report

    Week 7

    Week 8

    Ch. 14 – Diseases & Epidemiology

    Ch. 15 – Microbial Mechanisms of Pathogenicity

    Ch. 20 – Antimicrobial Drugs

    Lab 6 Disc Diffusion  Report

    ·  Disinfectants/Antiseptics

    ·  Antibiotic Sensitivity Testing

    Learning Module 3 Exam (Ch. 21-26) March 12 – April 15

     

    Assignment: 5-Paragraph Essay

    Week 9

    Week 10

    Ch. 21 – Diseases of Skin & Eyes

    Ch. 22 – Diseases of Nervous System

    Ch. 23 – Diseases of Cardiovascular/Lymphatics

    Lab 7 Culture Media

    Lab 8 Urine & Throat Cultures

    Quiz: Labs 7 & 8

    (Spring Break)

    Week 11

    Week 12

    Ch. 24 – Diseases of Respiratory System

    Ch. 25 – Diseases of Digestive System

    Ch. 26 – Diseases of Urogenital System

    Lab 9 ID of Gram-positive Bacteria

    Report: ID of Unknown

    Learning Module 4 (Ch. 16, 17, 19) April 16 – May 4

     

    Assignment: Discussion Board Post

    Week 13

    Week 14

    Week 15

    Ch. 16 – Innate Immunity

    Ch. 17 – Adaptive Immunity

    Ch. 19 – Disorders of Immune System

    Lab 10 ID of Gram-negative Bacteria

    Report: ID of Unknown

    May 7 - 9

    Prepare and take proctored comprehensive final

    Final Exam is administered as per stated in NMJC’s course schedule.

    NO early administering of final is permitted except in an emergency AND permission from the Dean must be granted.